NAME=16SrRNA_1-400b
DESCRIPTION=
VERSION=
USER_NAME=
PASSWORD=
OUTPUT_DIRECTORY=C:\Program Files\DNASoftware\Visual OMP
GENERATE_NUMANALY=FALSE
GENERATE_SOLUTION_EXPERIMENT=TRUE
SIMULATE_SOLUTION_EXPERIMENT=FALSE
NUM_RETURN=10
OPTIMAL_ENERGY_THRESHOLD_MONOMER=10
OPTIMAL_ENERGY_THRESHOLD_HOMODIMER=10
OPTIMAL_ENERGY_THRESHOLD_HETERODIMER=10
SUBOPTIMALWINDOW_MONOMER=50
SUBOPTIMALWINDOW_HOMODIMER=50
SUBOPTIMALWINDOW_HETERODIMER=100
SUBOPTIMALENERGY_WINDOW_MONOMER=0
SUBOPTIMALENERGY_WINDOW_HOMODIMER=0
SUBOPTIMALENERGY_WINDOW_HETERODIMER=0
SUBOPTIMALDISTANCE_MONOMER=3
SUBOPTIMALDISTANCE_HOMODIMER=3
SUBOPTIMALDISTANCE_HETERODIMER=3

ASSAY_TEMPERATURE=45
SODIUM_CONCENTRATION=0.1
MAGNESIUM_CONCENTRATION=0
SEQUENCE_NAME=16SrRNA_1-400
SEQUENCE_TYPE=DNA
CONCENTRATION=1e-009
SEQUENCE=ATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAA
STRAND=SENSE
SEQUENCE_NAME=OLIGO_1
SEQUENCE_TYPE=DNA
CONCENTRATION=1e-006
SEQUENCE=CAATATTCCCCACTGCTGCCTC
STRAND=SENSE
SEQUENCE_NAME=OLIGO_1_2
SEQUENCE_TYPE=DNA
CONCENTRATION=1e-006
SEQUENCE=GCAAGCTGTTTCCTGTTACCGTTC
STRAND=SENSE
SEQUENCE_NAME=OLIGO_1_3
SEQUENCE_TYPE=DNA
CONCENTRATION=1e-006
SEQUENCE=CCACTGCTGCCTCCCGTA
STRAND=SENSE
SEQUENCE_NAME=OLIGO_1_4
SEQUENCE_TYPE=DNA
CONCENTRATION=1e-006
SEQUENCE=CATCTGGGCACATCCGATGG
STRAND=SENSE
SEQUENCE_NAME=OLIGO_1_5
SEQUENCE_TYPE=DNA
CONCENTRATION=1e-006
SEQUENCE=TTACTCACCCGTCCGCCACTC
STRAND=SENSE
OLIGO_NAME=OLIGO_1
OLIGO_TARGET_NAME=16SrRNA_1-400
OLIGO_MAX_SIZE=25
OLIGO_MIN_SIZE=15
OLIGO_OPT_SIZE=20
OLIGO_SIZE_WT=0
OLIGO_SIZE_GT_WT=1
OLIGO_SIZE_LT_WT=1
OLIGO_SIZE_WT_SCALE=LINEAR
OLIGO_OPT_VAR_POS=LENGTH/2
OLIGO_MIN_VAR_POS=3
OLIGO_MAX_VAR_POS=LENGTH-2
OLIGO_OPT_TM=65
OLIGO_MIN_TM=60
OLIGO_MAX_TM=100
OLIGO_TM_WT=0
OLIGO_TM_GT_WT=-3
OLIGO_TM_LT_WT=3
OLIGO_OPT_TARGET_LOCAL_TM=0
OLIGO_MAX_TARGET_LOCAL_TM=70
OLIGO_TARGET_LOCAL_TM_WT=0
OLIGO_TARGET_LOCAL_TM_LT_WT=0
OLIGO_TARGET_LOCAL_TM_GT_WT=0.1
OLIGO_TARGET_LOCAL_LENGTH=35
OLIGO_OPT_TARGET_LOCAL_DG=0
OLIGO_MIN_TARGET_LOCAL_DG=-50
OLIGO_TARGET_LOCAL_DG_WT=0
OLIGO_TARGET_LOCAL_DG_GT_WT=0
OLIGO_TARGET_LOCAL_DG_LT_WT=0.1
OLIGO_OPT_DG=-24
OLIGO_MAX_DG=-3
OLIGO_MIN_DG=-100
OLIGO_DG_WT=0
OLIGO_DG_GT_WT=1
OLIGO_DG_LT_WT=-1
OLIGO_OPT_GCC=50
OLIGO_MIN_GCC=0
OLIGO_MAX_GCC=100
OLIGO_GCC_WT=0
OLIGO_GCC_GT_WT=0
OLIGO_GCC_LT_WT=0
OLIGO_OPT_MONOMER_TM=0
OLIGO_MAX_MONOMER_TM=65
OLIGO_MONOMER_TM_WT=0
OLIGO_MONOMER_TM_GT_WT=1
OLIGO_MONOMER_TM_LT_WT=0
OLIGO_MAX_MONOMER_DG=0
OLIGO_MONOMER_DG_WT=0
OLIGO_MONOMER_DG_GT_WT=0
OLIGO_MONOMER_DG_LT_WT=1
OLIGO_OPT_HOMODIMER_TM=0
OLIGO_MAX_HOMODIMER_TM=65
OLIGO_HOMODIMER_TM_WT=0
OLIGO_HOMODIMER_TM_GT_WT=0.1
OLIGO_HOMODIMER_TM_LT_WT=0
OLIGO_OPT_HOMODIMER_DG=0
OLIGO_MIN_HOMODIMER_DG=-50
OLIGO_HOMODIMER_DG_WT=0
OLIGO_HOMODIMER_DG_GT_WT=0
OLIGO_HOMODIMER_DG_LT_WT=1
OLIGO_MAX_MISHYB_TM=50
OLIGO_OPT_MISHYB_TM=0
OLIGO_MISHYB_TM_WT=0
OLIGO_MISHYB_TM_GT_WT=0.1
OLIGO_MISHYB_TM_LT_WT=0
OLIGO_MIN_MISHYB_DG=-50
OLIGO_OPT_MISHYB_DG=0
OLIGO_MISHYB_DG_WT=0
OLIGO_MISHYB_DG_GT_WT=0
OLIGO_MISHYB_DG_LT_WT=1
OLIGO_MAX_CROSSSHYB_TM=50
OLIGO_OPT_CROSSSHYB_TM=0
OLIGO_CROSSHYB_TM_WT=0
OLIGO_CROSSHYB_TM_GT_WT=0.5
OLIGO_CROSSHYB_TM_LT_WT=0
OLIGO_MIN_CROSSHYB_DG=-50
OLIGO_OPT_CROSSHYB_DG=0
OLIGO_CROSSHYB_DG_WT=0
OLIGO_CROSSHYB_DG_GT_WT=0
OLIGO_CROSSHYB_DG_LT_WT=1
OLIGO_MAX_POLY_X=0
OLIGO_CONCENTRATION=1e-006

OLIGO_NAME=OLIGO_1
OLIGO_TARGET_NAME=16SrRNA_1-400
OLIGO_TARGET_STRAND=SENSE
OLIGO_TYPE=PROBE
OLIGO_PARAMETER_PROFILE=Balanced
OLIGO_CANDIDATES=2796
OLIGO_HAIRPIN_FAILURES=0
OLIGO_HOMODIMER_FAILURES=0
OLIGO_LOCAL_TARGET_FAILURES=9
OLIGO_MISHYB_FAILURES=2

SOLUTION_NUMBER=1
SCORE=1003.92

OLIGO_NAME=OLIGO_1
OLIGO_TYPE=PROBE
OLIGO_TARGET_NAME=16SrRNA_1-400
OLIGO_TARGET_STRAND=SENSE
OLIGO_SEQUENCE=CAATATTCCCCACTGCTGCCTC
TARGET_START_POS=333
TARGET_ANTISENSE_START_POS=47
OLIGO_LENGTH=22
OLIGO_TM=64.7944
OLIGO_DG=-18.991
OLIGO_GCC=54.5455
OLIGO_MONOMER_TM=-0.984999
OLIGO_MONOMER_DG=2.112
OLIGO_TARGET_LOCAL_TM=39.3524
OLIGO_TARGET_LOCAL_DG=0.491

SOLUTION_NUMBER=2
SCORE=1003.92

OLIGO_NAME=OLIGO_1
OLIGO_TYPE=PROBE
OLIGO_TARGET_NAME=16SrRNA_1-400
OLIGO_TARGET_STRAND=SENSE
OLIGO_SEQUENCE=GCAAGCTGTTTCCTGTTACCGTTC
TARGET_START_POS=49
TARGET_ANTISENSE_START_POS=329
OLIGO_LENGTH=24
OLIGO_TM=64.8511
OLIGO_DG=-20.528
OLIGO_GCC=50
OLIGO_MONOMER_TM=1.00235
OLIGO_MONOMER_DG=2.311
OLIGO_TARGET_LOCAL_TM=45.4292
OLIGO_TARGET_LOCAL_DG=-0.045

SOLUTION_NUMBER=3
SCORE=999.15

OLIGO_NAME=OLIGO_1
OLIGO_TYPE=PROBE
OLIGO_TARGET_NAME=16SrRNA_1-400
OLIGO_TARGET_STRAND=SENSE
OLIGO_SEQUENCE=CCACTGCTGCCTCCCGTA
TARGET_START_POS=328
TARGET_ANTISENSE_START_POS=56
OLIGO_LENGTH=18
OLIGO_TM=64.2886
OLIGO_DG=-17.372
OLIGO_GCC=66.6667
OLIGO_MONOMER_TM=-0.984999
OLIGO_MONOMER_DG=2.112
OLIGO_TARGET_LOCAL_TM=55.1491
OLIGO_TARGET_LOCAL_DG=-1.082

SOLUTION_NUMBER=4
SCORE=996.62

OLIGO_NAME=OLIGO_1
OLIGO_TYPE=PROBE
OLIGO_TARGET_NAME=16SrRNA_1-400
OLIGO_TARGET_STRAND=SENSE
OLIGO_SEQUENCE=CATCTGGGCACATCCGATGG
TARGET_START_POS=206
TARGET_ANTISENSE_START_POS=176
OLIGO_LENGTH=20
OLIGO_TM=64.918
OLIGO_DG=-18.521
OLIGO_GCC=60
OLIGO_MONOMER_TM=7.55659
OLIGO_MONOMER_DG=0.787
OLIGO_TARGET_LOCAL_TM=54.5763
OLIGO_TARGET_LOCAL_DG=-1.15

SOLUTION_NUMBER=5
SCORE=995.278

OLIGO_NAME=OLIGO_1
OLIGO_TYPE=PROBE
OLIGO_TARGET_NAME=16SrRNA_1-400
OLIGO_TARGET_STRAND=SENSE
OLIGO_SEQUENCE=TTACTCACCCGTCCGCCACTC
TARGET_START_POS=85
TARGET_ANTISENSE_START_POS=296
OLIGO_LENGTH=21
OLIGO_TM=65.518
OLIGO_DG=-19.428
OLIGO_GCC=61.9048
OLIGO_MONOMER_TM=5.00926
OLIGO_MONOMER_DG=1.869
OLIGO_TARGET_LOCAL_TM=40.6233
OLIGO_TARGET_LOCAL_DG=0.272

SOLUTION_NUMBER=6
SCORE=993.643

OLIGO_NAME=OLIGO_1
OLIGO_TYPE=PROBE
OLIGO_TARGET_NAME=16SrRNA_1-400
OLIGO_TARGET_STRAND=SENSE
OLIGO_SEQUENCE=GTTTCCCAGACATTACTCACCCGTC
TARGET_START_POS=93
TARGET_ANTISENSE_START_POS=284
OLIGO_LENGTH=25
OLIGO_TM=65.5883
OLIGO_DG=-21.225
OLIGO_GCC=52
OLIGO_MONOMER_TM=10.1917
OLIGO_MONOMER_DG=2.199
OLIGO_TARGET_LOCAL_TM=38.6238
OLIGO_TARGET_LOCAL_DG=0.599

SOLUTION_NUMBER=7
SCORE=992.266

OLIGO_NAME=OLIGO_1
OLIGO_TYPE=PROBE
OLIGO_TARGET_NAME=16SrRNA_1-400
OLIGO_TARGET_STRAND=SENSE
OLIGO_SEQUENCE=TGTTTCCTGTTACCGTTCGACTTGC
TARGET_START_POS=42
TARGET_ANTISENSE_START_POS=335
OLIGO_LENGTH=25
OLIGO_TM=65.0492
OLIGO_DG=-21.196
OLIGO_GCC=48
OLIGO_MONOMER_TM=-15.363
OLIGO_MONOMER_DG=2.365
OLIGO_TARGET_LOCAL_TM=26.0613
OLIGO_TARGET_LOCAL_DG=0.557

SOLUTION_NUMBER=8
SCORE=990.234

OLIGO_NAME=OLIGO_1
OLIGO_TYPE=PROBE
OLIGO_TARGET_NAME=16SrRNA_1-400
OLIGO_TARGET_STRAND=SENSE
OLIGO_SEQUENCE=AGGCAGTTTCCCAGACATTACTCAC
TARGET_START_POS=98
TARGET_ANTISENSE_START_POS=279
OLIGO_LENGTH=25
OLIGO_TM=65.3903
OLIGO_DG=-20.817
OLIGO_GCC=48
OLIGO_MONOMER_TM=16.3303
OLIGO_MONOMER_DG=1.545
OLIGO_TARGET_LOCAL_TM=-1.36094
OLIGO_TARGET_LOCAL_DG=0.887

SOLUTION_NUMBER=9
SCORE=990.071

OLIGO_NAME=OLIGO_1
OLIGO_TYPE=PROBE
OLIGO_TARGET_NAME=16SrRNA_1-400
OLIGO_TARGET_STRAND=SENSE
OLIGO_SEQUENCE=GCCGTTACCCCACCTACTAGCTA
TARGET_START_POS=230
TARGET_ANTISENSE_START_POS=149
OLIGO_LENGTH=23
OLIGO_TM=65.5079
OLIGO_DG=-19.962
OLIGO_GCC=56.5217
OLIGO_MONOMER_TM=-14.3975
OLIGO_MONOMER_DG=2.571
OLIGO_TARGET_LOCAL_TM=53.2105
OLIGO_TARGET_LOCAL_DG=-1.112

SOLUTION_NUMBER=10
SCORE=989.179

OLIGO_NAME=OLIGO_1
OLIGO_TYPE=PROBE
OLIGO_TARGET_NAME=16SrRNA_1-400
OLIGO_TARGET_STRAND=SENSE
OLIGO_SEQUENCE=GCTGTTTCCTGTTACCGTTCGAC
TARGET_START_POS=46
TARGET_ANTISENSE_START_POS=333
OLIGO_LENGTH=23
OLIGO_TM=64.903
OLIGO_DG=-20.139
OLIGO_GCC=52.1739
OLIGO_MONOMER_TM=-15.363
OLIGO_MONOMER_DG=2.365
OLIGO_TARGET_LOCAL_TM=45.4277
OLIGO_TARGET_LOCAL_DG=-0.049

COMPUTATION_TIME=2.804 s