OMP Experiment File (OEF)

[The OMP Experiment File is in Boulder I/O (TAG=VALUE) format. Text inside square bracket is treated as a comment.]

[project information]
DESCRIPTION=Example OEF File
VERSION=1/22/2004 8:03:30 PM
GENERATE_LOG=True
OUTPUT_DIRECTORY=C:\Program Files\DNASoftware\Visual OMP
DEFAULT_GENERATE_NETTM=TRUE
GENERATE_NUMANALY=True
NUMANALY_MIN_TEMPERATURE=10
NUMANALY_MAX_TEMPERATURE=100
[signal parameters]
GENERATE_SIGNAL_PREDICTION=FALSE

[solution]
ASSAY_TEMPERATURE=45
MAGNESIUM_CONCENTRATION=0
SODIUM_CONCENTRATION=0.1

[defaults]
DEFAULT_AUTO_TAIL_FOLDING_THRESHOLD=500
STRAND_DEFAULT=Single

[sequences]

OPTIMAL_ENERGY_THRESHOLD_MONOMER=10
OPTIMAL_ENERGY_THRESHOLD_HOMODIMER=3
OPTIMAL_ENERGY_THRESHOLD_HETERODIMER=3
ILMAX_MONOMER=15
ILMAX_HOMODIMER=10
ILMAX_HETERODIMER=10
BULGEMAX_MONOMER=10
BULGEMAX_HOMODIMER=6
BULGEMAX_HETERODIMER=6
DEFAULT_GENERATESTRUCTURE_MONOMER=True
DEFAULT_GENERATESTRUCTURE_HOMODIMER=True
DEFAULT_GENERATESTRUCTURE_HETERODIMER=True
MULTIPLEX_ENABLE=FALSE

SEQUENCE_NAME=16SrRNA_1-400
SEQUENCE=ATCCTGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAA
CONCENTRATION=1E-09
SEQUENCE_TYPE=DNA
OLIGO_ENABLED=TRUE
STRAND=SINGLE
SEQUENCE_FUNCTION=TARGET
EXCLUDE_SPECIES=16SrRNA_1-400,16SrRNA_1-400
EXCLUDE_SPECIES_TYPE=16SrRNA_1-400,TARGET
TAIL_FOLDING=AUTO

SEQUENCE_NAME=OLIGO_1
SEQUENCE=CAATATTCCCCACTGCTGCCTC
CONCENTRATION=1E-06
SEQUENCE_TYPE=DNA
OLIGO_ENABLED=TRUE
STRAND=SINGLE
SEQUENCE_FUNCTION=PROBE
TAIL_FOLDING=AUTO
INTENDED_TARGET=16SrRNA_1-400

SEQUENCE_NAME=OLIGO_1_2
SEQUENCE=GCAAGCTGTTTCCTGTTACCGTTC
CONCENTRATION=1E-06
SEQUENCE_TYPE=DNA
OLIGO_ENABLED=TRUE
STRAND=SINGLE
SEQUENCE_FUNCTION=PROBE
TAIL_FOLDING=AUTO
INTENDED_TARGET=16SrRNA_1-400

SEQUENCE_NAME=OLIGO_1_3
SEQUENCE=CCACTGCTGCCTCCCGTA
CONCENTRATION=1E-06
SEQUENCE_TYPE=DNA
OLIGO_ENABLED=TRUE
STRAND=SINGLE
SEQUENCE_FUNCTION=PROBE
TAIL_FOLDING=AUTO
INTENDED_TARGET=16SrRNA_1-400

SEQUENCE_NAME=OLIGO_1_4
SEQUENCE=CATCTGGGCACATCCGATGG
CONCENTRATION=1E-06
SEQUENCE_TYPE=DNA
OLIGO_ENABLED=TRUE
STRAND=SINGLE
SEQUENCE_FUNCTION=PROBE
TAIL_FOLDING=AUTO
INTENDED_TARGET=16SrRNA_1-400

SEQUENCE_NAME=OLIGO_1_5
SEQUENCE=TTACTCACCCGTCCGCCACTC
CONCENTRATION=1E-06
SEQUENCE_TYPE=DNA
OLIGO_ENABLED=TRUE
STRAND=SINGLE
SEQUENCE_FUNCTION=PROBE
TAIL_FOLDING=AUTO
INTENDED_TARGET=16SrRNA_1-400